Evaluation of Glyceraldehyde 3-Phosphate Dehydrogenase (GADPH) and Luteinizing Hormone Receptor (LHR) Gene Polymorphisms in Buffaloes and Cows
DOI:
https://doi.org/10.6000/1927-520X.2025.14.11Keywords:
Buffaloes, cows, glyceraldehyde 3-phosphate dehydrogenase, luteinizing hormone receptor, polymorphismsAbstract
The present work evaluates whether buffalo and cattle have different sequences of luteinizing hormone receptor (LHr) and glyceraldehyde 3-phosphate dehydrogenase (GADPDH) genes. DNA was extracted from the peripheral blood of 38 animals (17 buffaloes and 21 cows) and the ovarian granulosa cells of 13 cows. Primers used for amplification were reported in the literature. The PCR products obtained were analyzed via electrophoresis on 1.5% agarose gels and sequenced via the Sanger technique. The electropherograms were analyzed via DNA Baser software, and the sequences were aligned via MEGA5 software. The quality of the electropherograms was evaluated via UGENE software.The edited contigs corresponding to the GAPDH gene were 100 nucleotides long, whereas those of the LHR gene reached 151 nucleotides. The most relevant changes were observed in the following positions: valine for isoleucine at position 65; asparagine for cysteine at position 67; alanine for glycine at position 70; threonine for proline at position 72; glycine for arginine at position 88; and alanine for aspartic acid at position 89. In the analyzed region, a variation was identified at position 446, where buffaloes preferentially present threonine, whereas in cows, alanine or valine.It is reported for the first time that there are differences in the LHr and GAPDH genes between buffaloes and cattle. The bioinformatic analysis of these sequences may explain whether the changes may affect the function of the genes and whether these may be responsible for the differences observed in the reproduction of the species analyzed.
References
Rehman SU, Hassan FU, Luo X, Li Z, Liu Q. Whole-genome sequencing and characterization of buffalo genetic resources: recent advances and future challenges. Animals (Basel) 2021; 11(3): 904.
https://doi.org/10.3390/ani11030904 DOI: https://doi.org/10.3390/ani11030904
Salzano A, De Canditiis C, Della Ragione F, Prandi A, Zullo G, Neglia G, et al. Evaluation of factors involved in the failure of ovum capture in super-ovulated buffaloes. Theriogenology 2018; 122: 102-8.
https://doi.org/10.1016/j.theriogenology.2018.09.007 DOI: https://doi.org/10.1016/j.theriogenology.2018.09.007
Almeida J, Brito MF, Neves BP, Becerra VAB, Auler PA, Hadad JP, et al. Use of cooled buffalo semen as a strategy to increase conception rates in fixed-time artificial insemination programs during unfavorable reproductive periods. Arq Bras Med Vet Zootec 2021; 73(3): 560-70.
https://doi.org/10.1590/1678-4162-12142 DOI: https://doi.org/10.1590/1678-4162-12142
Neglia G, Gasparrini B, Caracciolo di Brienza V, Di Palo R, Zicarelli L. First pregnancies carried to term after transfer of vitrified buffalo embryos entirely produced in vitro. Vet Res Commun 2004; 28 (Suppl 1): 233-6.
https://doi.org/10.1023/B:VERC.0000045414.65331.6a DOI: https://doi.org/10.1023/B:VERC.0000045414.65331.6a
Boni R, Santella L, Dale B, Di Palo R, Barbieri V. Maturazione in vitro di oocitibufalini: indagineultrastrutturale. Acta Med Vet. 1992; 38: 153-61.
Gasparrini B, Boccia L, Marchandise J, Di Palo R, George F, Donnay I, et al. Enrichment of in vitro maturation medium for buffalo (Bubalus bubalis) oocytes with thiol compounds: effects of cystine on glutathione synthesis and embryo development. Theriogenology 2006; 65(2): 275-87.
https://doi.org/10.1016/j.theriogenology.2005.05.036 DOI: https://doi.org/10.1016/j.theriogenology.2005.05.036
Tristan C, Shahani N, Sedlak TW, Sawa A. The diverse functions of GAPDH: views from different subcellular compartments. Cell Signal 2011; 23(2): 317-23.
https://doi.org/10.1016/j.cellsig.2010.08.003 DOI: https://doi.org/10.1016/j.cellsig.2010.08.003
Jia Y, Lei J. Molecular function of gonadotrophins and their receptors in the ovarian development of turbot
(Scophthalmus maximus). Gen Comp Endocrinol 2019; 277: 17-9.
https://doi.org/10.1016/j.ygcen.2019.02.014 DOI: https://doi.org/10.1016/j.ygcen.2019.02.014
Nogueira MFG, Fernandes P, Ereno RL, Simões RAL, Junior JB, Barros CM. Luteinizing hormone receptor (LHR): basic concepts in cattle and other mammals. A review. Anim Reprod 2018; 7(2): 51-64.
Mamluk R, Wolfenson D, Meidan R. LH receptor mRNA and cytochrome P450 side-chain cleavage expression in bovine theca and granulosa cells luteinized by LH or forskolin. Domest Anim Endocrinol 1998; 15(2): 103-14.
https://doi.org/10.1016/S0739-7240(97)00085-4 DOI: https://doi.org/10.1016/S0739-7240(97)00085-4
Gimenes LU, Ferraz ML, Fantinato-Neto P, Chiaratti MR, Mesquita LG, Sá Filho MF, et al. The interval between the emergence of pharmacologically synchronized ovarian follicular waves and ovum pickup does not significantly affect in vitro embryo production in Bos indicus, Bos taurus, and Bubalus bubalis. Theriogenology 2015; 83(3): 385-93.
https://doi.org/10.1016/j.theriogenology.2014.09.030 DOI: https://doi.org/10.1016/j.theriogenology.2014.09.030
Okonechnikov K, Golosova O, Fursov M; UGENE team. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 2012; 28(8): 1166-7.
https://doi.org/10.1093/bioinformatics/bts091 DOI: https://doi.org/10.1093/bioinformatics/bts091
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994; 22(22): 4673-80.
https://doi.org/10.1093/nar/22.22.4673 DOI: https://doi.org/10.1093/nar/22.22.4673
Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 2018; 35(6): 1547-9.
https://doi.org/10.1093/molbev/msy096 DOI: https://doi.org/10.1093/molbev/msy096
Pak MA, Markhieva KA, Novikova MS, Petrov DS, Vorobyev IS, Maksimova ES, et al. Using AlphaFold to predict the impact of single mutations on protein stability and function. PLoS One 2023; 18(3): e0282689.
https://doi.org/10.1371/journal.pone.0282689 DOI: https://doi.org/10.1371/journal.pone.0282689
Berdugo-Gutiérrez JA, Tarazona-Morales AM, Echeverry-Zuluaga JJ, López-Herrera A. Análisis in silico de la expresióngénicaencélulas de granulosa de folículospreovulatoriosen dos especies de bovinos. Rev Mex Cienc Pecu 2021; 12(4): 1276-91.
https://doi.org/10.22319/rmcp.v12i4.5625 DOI: https://doi.org/10.22319/rmcp.v12i4.5625
Sahoo PR, Mishra SR, Mohapatra S, Sahu S, Sahoo G, Behera PC. In silico structural and phylogenetic analysis of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) in domestic animals. Indian J Anim Res 2019; 53(12): 1607-12.
https://doi.org/10.18805/ijar.B-3712 DOI: https://doi.org/10.18805/ijar.B-3712
Kumar A, Singh SP, Sharma D, Kumar A, Uttam V. Molecular characterization of the partial coding sequence (CDS) of the luteinizing hormone receptor (LHR) gene in Indian cattle breeds. Vet Arhiv 2025; 95(2): 135-48.
https://doi.org/10.24099/vet.arhiv.2504 DOI: https://doi.org/10.24099/vet.arhiv.2504
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