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Inference about Monophyly of the Family Oedipodidae and the Classification of Subfamilies Based on 16S rDNA Sequencess DOI: http://dx.doi.org/10.6000/1927-3037.2014.03.03.4 Published: 15 October 2014 |
Abstract: Most of grasshoppers in the family Oedipodidae are the famous agriculture pests in China. However monophyly and the relationships among the subfamilies within this family are unclear up to now. Here the phylogeny of the Oedipodidae was reconstructed based on 16S rDNA sequence fragments by using Mekongiella kingdoni and Atractomorpha sinensis as outgroups under weighted MP, NJ and Bayesian criteria. The 408 bp fragments of mitochondrial 16S rRNA gene were sequenced for 15 species from 4 subfamilies of the family Oedipodidae, and the homologous sequences of other 15 species of grasshoppers were downloaded from the GenBank data library. The numbers of transitions and transversions among pairwise comparisons of the 16S fragments were respectively plotted against percentage sequence differences. Saturation of transitions was discovered, and transversions were not saturated with the increase of percentage sequence difference in the plots. All the individuals of the Oedipodidae excluding Trilophidia annulata were gathered together in the three trees. Our results are very different from the traditionary taxonomy of the Oedipodidae including 4 subfamilies. The Bryodemellinae is not supported as a subfamily, and neither Locustinae nor Oedipodinae are supported as a monophyletic group in this study. Keywords: Oedipodidae, 16S rDNA, monophyly, subfamily.Download Full Article |
Localization Analysis of Natural Toxin of Solanum tuberosum L. via Mass Spectrometric Imaging DOI: http://dx.doi.org/10.6000/1927-3037.2016.05.01.1 Published: 02 March 2016 |
Abstract: The use of mass spectrometry imaging (MSI) revealed the localization of a-solanine and a-chaconine as natural toxins for Potato (Solanum tuberosum L.). The content of Potato glycoalkaloids, a-solanine and a-chaconine, were quantitatively determined by high performance liquid chromatography (HPLC). Matrix assisted laser desorption/ionization-based tandem mass spectrometry (MS) could determine a-solanine and a-chaconine from raw potato extraction and section. After budbreak, a-solanine and a-chaconine were produced and localized at periderm and germ compared with that before budbreak. At germ region, these glycoalkaloids did not exist whole germ region but eccentrically localize at germ surface and central region. The amount of a-chaconine was twofold higher than a-solanine at periderm. At germ region, there was no difference between these toxins. Keywords: Food safety, glycoalkaloid, mass spectrometry imaging, a-solanine, a-chaconine.Download Full Article |
MarA, SoxS and Rob of Escherichia coli – Global Regulators of Multidrug Resistance, Virulence and Stress Response DOI: http://dx.doi.org/10.6000/1927-3037.2013.02.03.2 Published: 30 September 2013 |
Abstract: Bacteria have a great capacity for adjusting their metabolism in response to environmental changes by linking extracellular stimuli to the regulation of genes by transcription factors. By working in a co-operative manner, transcription factors provide a rapid response to external threats, allowing the bacteria to survive. This review will focus on transcription factors MarA, SoxS and Rob in Escherichia coli, three members of the AraC family of proteins. These homologous proteins exemplify the ability to respond to multiple threats such as oxidative stress, drugs and toxic compounds, acidic pH, and host antimicrobial peptides. MarA, SoxS and Rob recognize similar DNA sequences in the promoter region of more than 40 regulatory target genes. As their regulons overlap, a finely tuned adaptive response allows E. coli to survive in the presence of different assaults in a co-ordinated manner. These regulators are well conserved amongst Enterobacteriaceae and due to their broad involvement in bacterial adaptation in the host, have recently been explored as targets to develop new anti-virulence agents. The regulators are also being examined for their roles in novel technologies such as biofuel production. Keywords: Antibiotic resistance, AraC family regulators, Escherichia coli, Enterobacteriaceae, global regulators, drug development.Download Full Article |